文件列表:

.classpath (382, 2019-07-17)
.project (371, 2019-07-17)
LICENSE (35149, 2019-07-17)
build.xml (1796, 2019-07-17)
plugins.config (226, 2019-07-17)
resources (0, 2019-07-17)
resources\PSFGenerator.png (76693, 2019-07-17)
resources\PSFGenerator_icon.png (54965, 2019-07-17)
resources\PSFGenerator_icon.xml (4383, 2019-07-17)
src (0, 2019-07-17)
src\PSFGenerator.java (9297, 2019-07-17)
src\PSF_Generator.java (6465, 2019-07-17)
src\matlab (0, 2019-07-17)
src\matlab\Converter.java (5615, 2019-07-17)
src\plugins (0, 2019-07-17)
src\plugins\sage (0, 2019-07-17)
src\plugins\sage\psfgenerator (0, 2019-07-17)
src\plugins\sage\psfgenerator\PSFGenerator.java (2068, 2019-07-17)
src\plugins\sage\psfgenerator\PSFGeneratorIcyFrame.java (8435, 2019-07-17)
src\psf (0, 2019-07-17)
src\psf\.svn (0, 2019-07-17)
src\psf\.svn\all-wcprops (593, 2019-07-17)
src\psf\.svn\entries (913, 2019-07-17)
src\psf\.svn\text-base (0, 2019-07-17)
src\psf\.svn\text-base\DefocussingPSF.java.svn-base (6925, 2019-07-17)
src\psf\.svn\text-base\GaussianPSF.java.svn-base (4549, 2019-07-17)
src\psf\.svn\text-base\KoehlerPSF.java.svn-base (6311, 2019-07-17)
src\psf\.svn\text-base\MainDialog.java.svn-base (13477, 2019-07-17)
src\psf\Data3D.java (8037, 2019-07-17)
src\psf\PSF.java (4560, 2019-07-17)
src\psf\Point3D.java (2069, 2019-07-17)
src\psf\bornwolf (0, 2019-07-17)
src\psf\bornwolf\.svn (0, 2019-07-17)
src\psf\bornwolf\.svn\all-wcprops (646, 2019-07-17)
src\psf\bornwolf\.svn\entries (870, 2019-07-17)
src\psf\bornwolf\.svn\text-base (0, 2019-07-17)
src\psf\bornwolf\.svn\text-base\BornWolf.java.svn-base (3597, 2019-07-17)
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PSFGenerator ============ [**A Java software package to generate realistic 3D microscope Point-Spread Function (PSF)**](http://bigwww.epfl.ch/algorithms/psfgenerator/) _Written by Hagai Kirshner and Daniel Sage at the Biomedical Image Group (BIG), EPFL, Switzerland_ ## Outline PSF Generator is a Java software package that allows one to generate and visualize various 3D models of a microscope PSF. The current version has more than fifteen different models: * 3D diffractive models: scalar-based diffraction model Born & Wolf, scalar-based diffraction model with 3 layers Gibson & Lanni, and vectorial-based model Richards & Wolf, and Variable Refractive Index Gibson & Lanni model. * Defocussing a 2D lateral function with 1D axial function: the available lateral functions are: "Gaussian", "Lorentz", "Cardinale-Sine", "Cosine", "Circular-Pupil", "Astigmatism", "Oriented-Gaussian", "Double-Helix". * Optical Transfer Function generated in the Fourier domain: Koehler simulation, defocus simulation. PSF Generator is provided for several environments: as ImageJ/Fiji plugin, as an Icy plugin, and as a Java standalone application. The program requires only few parameters which are readily-available for microscopy practitioners. Our Java implementation achieves fast execution times, as it is based on multi-threading the computational tasks and on a numerical method that adapts to the oscillatory nature of the required integrands. Potential applications are 3D deconvolution, 3D particle localization and tracking, and extended depth of field estimation to name a few. ## References * H. Kirshner, F. Aguet, D. Sage, M. Unser [3-D PSF Fitting for Fluorescence Microscopy: Implementation and Localization Application](http://bigwww.epfl.ch/publications/kirshner1301.html) Journal of Microscopy, 2013. * A. Griffa, N. Garin and D. Sage, [Comparison of Deconvolution Software in 3D Microscopy. A User Point of View](http://bigwww.epfl.ch/publications/griffa1001.html), G.I.T. Imaging & Microscopy, 2010. * D. Sage, L. Donati, F. Soulez, D. Fortun, G. Schmit, A. Seitz, R. Guiet, C. Vonesch, M. Unser [DeconvolutionLab2: An Open-Source Software for Deconvolution Microscopy](http://bigwww.epfl.ch/publications/sage1701.html) Methods”Image Processing for Biologists, 2017.

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