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LICENSE (35141, 2023-09-30)
MANIFEST.in (106, 2023-09-30)
docs (0, 2023-09-30)
docs\Makefile (7656, 2023-09-30)
docs\conf.py (11624, 2023-09-30)
docs\index.rst (2908, 2023-09-30)
docs\make.bat (7249, 2023-09-30)
docs\ncempy.algo.rst (1747, 2023-09-30)
docs\ncempy.command_line.rst (381, 2023-09-30)
docs\ncempy.edstomo.rst (1033, 2023-09-30)
docs\ncempy.eval.rst (540, 2023-09-30)
docs\ncempy.io.rst (691, 2023-09-30)
docs\ncempy.rst (184, 2023-09-30)
docs\ncempy.viz.rst (120, 2023-09-30)
ncempy (0, 2023-09-30)
ncempy\__init__.py (112, 2023-09-30)
ncempy\algo (0, 2023-09-30)
ncempy\algo\__init__.py (15263, 2023-09-30)
ncempy\algo\distortion.py (8278, 2023-09-30)
ncempy\algo\fourier_operations.py (4488, 2023-09-30)
ncempy\algo\gaussND.py (17632, 2023-09-30)
ncempy\algo\local_max.py (2355, 2023-09-30)
ncempy\algo\math.py (2900, 2023-09-30)
ncempy\algo\multicorr_funcs.py (9761, 2023-09-30)
ncempy\algo\peak_find.py (44302, 2023-09-30)
ncempy\algo\radial_profile.py (13313, 2023-09-30)
ncempy\command_line (0, 2023-09-30)
ncempy\command_line\__init__.py (0, 2023-09-30)
ncempy\command_line\ncem2png.py (5664, 2023-09-30)
ncempy\data (0, 2023-09-30)
ncempy\data\01_Si110_5images.emi (2105923, 2023-09-30)
ncempy\data\01_Si110_5images_1.ser (10486918, 2023-09-30)
ncempy\data\08_carbon.dm3 (302702, 2023-09-30)
ncempy\data\16_STOimage.emi (2109440, 2023-09-30)
ncempy\data\16_STOimage_1.ser (2101248, 2023-09-30)
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======== openNCEM ======== A collection of packages, scripts, and tools for electron microscopy data analysis supported by the National Center for Electron Microscopy facility of the Molecular Foundry. Read the documentation: https://openncem.readthedocs.io/en/latest/. Installation of the ncempy package ============================== The newest version can be installed using pip: ``>> pip install ncempy`` To ensure dependencies for the EDS tomography reconstruction are installed: ``>> pip install ncempy[edstomo]`` Components ========== The openNCEM collection comes with different components, described below. **ncempy** openNCEM's python package to provide various algorithms and routines to process or simulate images. **tools** The tools build leveraging the algorithms and routines provided in the libraries/packages. They are subordered by the different problems they address. Commands ======== **ncem2png** Extracts a PNG file from the data in a SER, DM3, or DM4 file. For 3D and 4D files, it tries to extract an image from the middle of the third and forth dimension. License ======= ``ncempy`` is dual licensed under GPLv3 and MIT. The io module is the only part released under MIT to improve interoperability with other packages. This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see https://www.gnu.org/licenses/.

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