WCMC_DA
所属分类：数据挖掘/数据仓库
开发工具：JavaScript
文件大小：169357KB
下载次数：0
上传日期：2017-05-04 17:07:26
上 传 者：
sh-1993
说明： 西海岸代谢组学中心-数据分析
(West Coast Metabolomics Center - Data Analysis)
文件列表:
WCMC.Course2017.STAT (0, 2017-05-05)
WCMC.Course2017.STAT\.Rbuildignore (28, 2017-05-05)
WCMC.Course2017.STAT\.Rhistory (21325, 2017-05-05)
WCMC.Course2017.STAT\DESCRIPTION (381, 2017-05-05)
WCMC.Course2017.STAT\NAMESPACE (31, 2017-05-05)
WCMC.Course2017.STAT\R (0, 2017-05-05)
WCMC.Course2017.STAT\R\.Rhistory (2812, 2017-05-05)
WCMC.Course2017.STAT\R\launch_WCMC_DA.R (3084, 2017-05-05)
WCMC.Course2017.STAT\WCMC.Course2017.STAT.Rproj (356, 2017-05-05)
WCMC.Course2017.STAT\inst (0, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts (0, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\FontAwesome.otf (134808, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\fontawesome-webfont.eot (165742, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\fontawesome-webfont.svg (444379, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\fontawesome-webfont.ttf (165548, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\fontawesome-webfont.woff (98024, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\fontawesome-webfont.woff2 (77160, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\glyphicons-halflings-regular.eot (20127, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\glyphicons-halflings-regular.svg (108738, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\glyphicons-halflings-regular.ttf (45404, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\glyphicons-halflings-regular.woff (23424, 2017-05-05)
WCMC.Course2017.STAT\inst\fonts\glyphicons-halflings-regular.woff2 (18028, 2017-05-05)
WCMC.Course2017.STAT\inst\www (0, 2017-05-05)
WCMC.Course2017.STAT\inst\www\BoxPlot.png (4479, 2017-05-05)
WCMC.Course2017.STAT\inst\www\HeatMap.png (2404, 2017-05-05)
WCMC.Course2017.STAT\inst\www\PCA.png (1419, 2017-05-05)
WCMC.Course2017.STAT\inst\www\VolcanoPlot.png (4276, 2017-05-05)
WCMC.Course2017.STAT\inst\www\WCMC.Stat.Course2017.css (1455, 2017-05-05)
WCMC.Course2017.STAT\inst\www\WCMC.Stat.Course2017.js (135, 2017-05-05)
WCMC.Course2017.STAT\inst\www\angular.min.js (160048, 2017-05-05)
WCMC.Course2017.STAT\inst\www\bootstrap.css (146082, 2017-05-05)
WCMC.Course2017.STAT\inst\www\bootstrap.js (68954, 2017-05-05)
WCMC.Course2017.STAT\inst\www\font-awesome.css (37408, 2017-05-05)
WCMC.Course2017.STAT\inst\www\fonts (0, 2017-05-05)
WCMC.Course2017.STAT\inst\www\fonts\FontAwesome.otf (134808, 2017-05-05)
WCMC.Course2017.STAT\inst\www\fonts\fontawesome-webfont.eot (165742, 2017-05-05)
... ...
# Metabox
This package is for West Coast Metabolomics Center 2017 Summer Course Statistics Part.
cite:
Wanichthanarak K, Fan S, Grapov D, Barupal DK, Fiehn O. Metabox: A Toolbox for Metabolomic Data Analysis, Interpretation and Integrative Exploration. PloS one. 2017 Jan 31;12(1):e0171046.
This package is built as a wrapper of [metabox](http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0171046) [code](https://github.com/kwanjeeraw/metabox).
## Online version (recommended):
http://wcmc-da.fiehnlab.ucdavis.edu
## To Install Locally:
Software requirement: [R 3.3.3](https://cran.r-project.org/bin/windows/base/R-3.3.3-win.exe) (and [RTools](https://cran.r-project.org/bin/windows/Rtools/Rtools34.exe) for Windows Users). [R Studio](https://download1.rstudio.org/RStudio-1.0.136.exe) is highly recommended. Run following code in R (or R Studio).
```
shell("zip") # Some packages ask for zip. If error returns, visit https://cran.r-project.org/web/packages/openxlsx/vignettes/Introduction.pdf.
#Install dependency packages.
install.packages('devtools', repos="http://cran.rstudio.com/")
library(devtools)
install.packages('opencpu')
library(opencpu)
install.packages("pacman")
install.packages("data.table")
#Install WCMC_DA
install.packages("https://github.com/slfan2013/WCMC_DA/raw/master/WCMC.MasterController_0.1.0.tar.gz",repos=NULL)
WCMC.MasterController::update_master()
WCMC.Course2017.STAT::update_childs()
```
## To Launch Locally:
```
library(opencpu);
opencpu$browse("library/WCMC.Course2017.STAT/www");
```
## Tutorial:
https://github.com/slfan2013/WCMC_DA/wiki
## To update to the newest version:
```
WCMC.MasterController::update_master()
WCMC.Course2017.STAT::update_childs()
```
## To Report Bugs or Provide Suggestions:
Please go to https://github.com/slfan2013/WCMC_DA/issues OR contact the maintainer through email, slfan at ucdavis dot edu, and thanks for your contribution.
#### please note that, if you use the metabox locally, the first time running will be slow depending on the internet because it needs to download all the dependency packages.
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