文件列表:

dynasim/ (0, 2019-07-02)
dynasim/STG.m (2958, 2019-07-02)
dynasim/stg.mech (2493, 2019-07-02)
figures/ (0, 2019-07-02)
figures/HH/ (0, 2019-07-02)
figures/HH/fig_HH.png (121264, 2019-07-02)
figures/HH/figure_HH.m (5051, 2019-07-02)
figures/HH/snippet.m (204, 2019-07-02)
figures/benchmarks/ (0, 2019-07-02)
figures/benchmarks/figure_benchmark.m (1689, 2019-07-02)
figures/benchmarks/figure_sup_stability.m (11783, 2019-07-02)
figures/benchmarks/loadNeuronData.m (1427, 2019-07-02)
figures/benchmarks/neuron/ (0, 2019-07-02)
figures/benchmarks/neuron/HH_benchmark1.py (2068, 2019-07-02)
figures/benchmarks/neuron/HH_benchmark2.py (1989, 2019-07-02)
figures/benchmarks/neuron/HH_benchmark3.py (1770, 2019-07-02)
figures/benchmarks/neuron/MICurrent.hpp (1190, 2019-07-02)
figures/benchmarks/neuron/STG_benchmark1.py (2967, 2019-07-02)
figures/benchmarks/neuron/STG_benchmark2.py (2747, 2019-07-02)
figures/benchmarks/neuron/STG_benchmark3.py (2672, 2019-07-02)
figures/benchmarks/neuron/acurrent.mod (951, 2019-07-02)
figures/benchmarks/neuron/benchmark-neuron.sh (844, 2019-07-02)
figures/benchmarks/neuron/cad.mod (488, 2019-07-02)
figures/benchmarks/neuron/cadecay.mod (2905, 2019-07-02)
figures/benchmarks/neuron/cas.mod (1067, 2019-07-02)
figures/benchmarks/neuron/cat.mod (1282, 2019-07-02)
figures/benchmarks/neuron/hcurrent.mod (626, 2019-07-02)
figures/benchmarks/neuron/kca.mod (757, 2019-07-02)
figures/benchmarks/neuron/kd.mod (609, 2019-07-02)
figures/benchmarks/neuron/na.mod (997, 2019-07-02)
figures/benchmarks/neuron/test_HH.py (1912, 2019-07-02)
figures/benchmarks/neuron/test_STG.py (2092, 2019-07-02)
figures/benchmarks/neuron_standalone.m (3234, 2019-07-02)
figures/benchmarks/testDynaSimHH.m (4019, 2019-07-02)
figures/benchmarks/testDynaSimSTG.m (6219, 2019-07-02)
figures/benchmarks/testNeuronHH.m (2625, 2019-07-02)
figures/benchmarks/testNeuronSTG.m (2615, 2019-07-02)
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# xolotl: An Intuitive and Approachable Neuron & Network Simulator This repository contains code, latex documents and supporting images that allows you to reproduce all figures and text in this paper. # Status The paper has been published in Frontiers in Neuroinformatics. https://www.frontiersin.org/articles/10.3389/fninf.2018.00087/full This paper is now at the "preprint" stage, and has been submitted. You can read it on the arXiv [here](http://biorxiv.org/cgi/content/short/394973v1) # Structure The Latex source for the paper is in `paper/` MATLAB scripts to make every figure in the paper are in `figures/`. You should be able to run each script and it should make the figure exactly as it appears in the paper. # Building ## macOS Using a complete TeX distribution (I used MacTex), `paper.tex` can be compiled using: 1. open `paper.tex` in `TexShop` 2. + + L 3. + + B 4. + + L (Yes, you have to typeset it twice, first for Latex to figure out which citations you're using, then to insert them) ### Troubleshooting If something goes wrong, you are probably missing a package. Try removing all aux files and trying again.

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