NGseqBasic
所属分类：其他
开发工具：Shell
文件大小：0KB
下载次数：0
上传日期：2019-12-23 15:00:04
上 传 者：
sh-1993
说明： DNase、ATAC、ChIP数据的映射、过滤和数据中心可视化管道，
(Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data,)
文件列表:
LICENSE (1072, 2019-12-23)
NGseqBasic.sh (51783, 2019-12-23)
bin/ (0, 2019-12-23)
bin/bashHelpers/ (0, 2019-12-23)
bin/bashHelpers/blacklistSetters.sh (2138, 2019-12-23)
bin/bashHelpers/bowtieStatistics.sh (1994, 2019-12-23)
bin/bashHelpers/cleanUpAndList.sh (3277, 2019-12-23)
bin/bashHelpers/fileTesters.sh (2825, 2019-12-23)
bin/bashHelpers/genomeSetters.sh (3874, 2019-12-23)
bin/bashHelpers/inputFastqs.sh (7918, 2019-12-23)
bin/bashHelpers/logFilePrinter.sh (1952, 2019-12-23)
bin/bashHelpers/mappingSubroutines.sh (15461, 2019-12-23)
bin/bashHelpers/parameterSetters.sh (4124, 2019-12-23)
bin/bashHelpers/trimmingSubroutines.sh (24578, 2019-12-23)
bin/bashHelpers/usageAndVersion.sh (18825, 2019-12-23)
bin/bashHelpers/validateSetup/ (0, 2019-12-23)
bin/bashHelpers/validateSetup/g.txt (18072, 2019-12-23)
bin/bashHelpers/validateSetup/l.txt (5162, 2019-12-23)
bin/bashHelpers/validateSetup/s.txt (6476, 2019-12-23)
bin/mainScripts/ (0, 2019-12-23)
bin/mainScripts/QC_and_Trimming.sh (13912, 2019-12-23)
bin/mainScripts/afterBowtieMapping.sh (55066, 2019-12-23)
bin/mainScripts/dataHubGenerator.sh (59490, 2019-12-23)
bin/perlHelpers/ (0, 2019-12-23)
bin/perlHelpers/data2gff.pl (10784, 2019-12-23)
bin/perlHelpers/fastq_scores_bowtie1.pl (4875, 2019-12-23)
bin/perlHelpers/fastq_scores_bowtie2.pl (4845, 2019-12-23)
bin/perlHelpers/fastq_scores_bowtie3.pl (4875, 2019-12-23)
bin/perlHelpers/reverse_seq.pl (3913, 2019-12-23)
bin/perlHelpers/sam2fastq.pl (8788, 2019-12-23)
bin/perlHelpers/trim1base3prime.pl (2109, 2019-12-23)
bin/perlHelpers/windowingScript.pl (3684, 2019-12-23)
conf/ (0, 2019-12-23)
conf/BLACKLIST/ (0, 2019-12-23)
conf/BLACKLIST/hg18.bed (43444, 2019-12-23)
conf/BLACKLIST/hg19.bed (68658, 2019-12-23)
... ...
# NGseqBasic
Mapping, filtering, and data hub visualisation pipeline for DNase, ATAC, ChIP data
External users :
http://userweb.molbiol.ox.ac.uk/public/telenius/NGseqBasicManual/external/index.html
Intra-WIMM users :
http://userweb.molbiol.ox.ac.uk/public/telenius/PipeSite.html
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