sbml2smw3.1
所属分类：后台框架
开发工具：Java
文件大小：0KB
下载次数：0
上传日期：2019-10-06 19:48:30
上 传 者：
sh-1993
说明： SBML2SMW系统于2010年开发。自那时以来，SMW后端发生了很大变化，2010年的部署也没有改变...，
(The SBML2SMW system had been developed in 2010. Since then pretty much changed in the SMW back end and as-is the 2010 deployment is no longer working. Purpose of this repository is to refresh the java components and make it therefore up-to-date with SMW3.1.0)
文件列表:
translationServer/ (0, 2019-10-06)
translationServer/.classpath (1308, 2019-10-06)
translationServer/.project (546, 2019-10-06)
translationServer/.settings/ (0, 2019-10-06)
translationServer/.settings/org.eclipse.jdt.core.prefs (907, 2019-10-06)
translationServer/.settings/org.eclipse.m2e.core.prefs (86, 2019-10-06)
translationServer/etc/ (0, 2019-10-06)
translationServer/etc/jetty.xml (10527, 2019-10-06)
translationServer/etc/keystore (1370, 2019-10-06)
translationServer/etc/realm.properties (66, 2019-10-06)
translationServer/etc/webdefault.xml (18333, 2019-10-06)
translationServer/pom.xml (1836, 2019-10-06)
translationServer/src/ (0, 2019-10-06)
translationServer/src/main/ (0, 2019-10-06)
translationServer/src/main/java/ (0, 2019-10-06)
translationServer/src/main/java/il/ (0, 2019-10-06)
translationServer/src/main/java/il/org/ (0, 2019-10-06)
translationServer/src/main/java/il/org/tibc/ (0, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/ (0, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/L/ (0, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/L/LanguageSpecs.java (2176, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/o/ (0, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/o/Species.java (1253, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/ (0, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/LoadReactionServlet.java (20331, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/StoreModificationServlet.java (2207, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/StoreReactionServlet.java (6730, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/StoreSpeciesServlet.java (3863, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/TranslationServer.java (1530, 2019-10-06)
translationServer/src/main/java/il/org/tibc/sbml2smw/tS/WikiAccessor.java (5311, 2019-10-06)
translationServer/webapps/ (0, 2019-10-06)
translationServer/webapps/ROOT/ (0, 2019-10-06)
translationServer/webapps/ROOT/WEB-INF/ (0, 2019-10-06)
translationServer/webapps/ROOT/WEB-INF/jetty-web.xml (289, 2019-10-06)
translationServer/webapps/ROOT/WEB-INF/web.xml (1816, 2019-10-06)
# sbml2smw3.1.0
The SBML2SMW system had been developed in 2010. Since then pretty much changed in the SMW back end and as-is the 2010 deployment is no longer working. Purpose of this repository is to refresh the java components and make it therefore up-to-date with SMW3.1.0
# translationServer
## build
````
mvn package
````
## deploy
ensure that the following folder structure holds:
- ts3.jar
- webapps/ROOT/WEB-INF/web.xml
- etc/jetty.xml
- etc/webdefault.html
- etc/realm.properties
## run
````
/usr/bin/java -cp ts3.jar il.org.tibc.sbml2smw.tS.TranslationServer
````
The following call will store an object of type PROTEIN with name s4 etc.
`````
GET http://18.184.71.102:9090/store/species/x?type=PROTEIN&name=s4&hyp=false&language=en&resolve=true&annotation=&protType=GENERIC&wiki=http://18.184.71.102/&namespace=http://18.184.71.102/&language=en&resolve=true&user=#######&pass=###
````
近期下载者：
相关文件：
收藏者：