vmm-macrophytes-occurrences
所属分类：虚拟化
开发工具：R
文件大小：0KB
下载次数：0
上传日期：2022-11-18 13:00:25
上 传 者：
sh-1993
说明： 佛兰德斯环境局（VMM）大型植物发生的DwC绘图，
(DwC mapping of Flanders Environment Agency (VMM) macrophytes occurrences,)
文件列表:
LICENSE (1097, 2022-11-18)
data/ (0, 2022-11-18)
data/processed/ (0, 2022-11-18)
data/processed/event.csv (1732999, 2022-11-18)
data/processed/mof.csv (5708160, 2022-11-18)
data/processed/occurrence.csv (8964576, 2022-11-18)
data/raw/ (0, 2022-11-18)
data/raw/macrofyten 2022-10-04T08_39_42.720Z.xlsx (5430644, 2022-11-18)
sql/ (0, 2022-11-18)
sql/dwc_event.sql (2390, 2022-11-18)
sql/dwc_mof.sql (11176, 2022-11-18)
sql/dwc_occurrence.sql (5055, 2022-11-18)
src/ (0, 2022-11-18)
src/dwc_mapping.Rmd (5569, 2022-11-18)
tests/ (0, 2022-11-18)
tests/test_dwc_event_occurrence_mof.R (7284, 2022-11-18)
vmm-macrophytes-occurrences.Rproj (205, 2022-11-18)
[](https://www.riparias.be/)
## Rationale
This repository contains the functionality to standardize the macrophytes data of the [Flanders Environment Agency (VMM)](https://en.vmm.be/) to a [Darwin Core Archive](https://www.gbif.org/darwin-core) that can be harvested by [GBIF](https://www.gbif.org/).
## Workflow
[source data](data/raw) → Darwin Core [mapping script](src/dwc_mapping.Rmd) using [SQL](sql) → generated [Darwin Core files](data/processed)
For an overview of the mapping of the fields, see [issue 23](https://github.com/riparias/vmm-macrophytes-occurrences/issues/23).
## Published dataset
* [Dataset on the IPT](https://ipt.inbo.be/resource?r=vmm-macrophytes-occurrences)
* [Dataset on GBIF](https://doi.org/10.15468/8e9te4)
## Repo structure
The repository structure is based on [Cookiecutter Data Science](http://drivendata.github.io/cookiecutter-data-science/) and the [Checklist recipe](https://github.com/trias-project/checklist-recipe). Files and directories indicated with `GENERATED` should not be edited manually.
```
├── README.md : Description of this repository
├── LICENSE : Repository license
├── vmm-macrophytes-occurrences.Rproj : RStudio project file
├── .gitignore : Files and directories to be ignored by git
│
├── src
│ └── dwc_mapping.Rmd : Darwin Core mapping script
|
├── sql : Darwin Core transformations
│ ├── dwc_event.sql
│ ├── dwc_occurrence.sql
│ └── dwc_mof.sql
|
├── tests
│ └── test_dwc_event_occurrence_mof.R : Tests to check DwC mapping
|
└── data
├── raw : Source data, input for mapping script
└── processed : Darwin Core output of mapping script GENERATED
```
## Installation
1. Clone this repository to your computer
2. Open the RStudio project file
3. Open the `dwc_mapping.Rmd` [R Markdown file](https://rmarkdown.rstudio.com/) in RStudio
4. Install any required packages
5. Click `Run > Run All` to generate the processed data
## License
[MIT License](LICENSE) for the code and documentation in this repository. The included data is released under another license.
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