datum

所属分类:生物医药技术
开发工具:Clojure
文件大小:0KB
下载次数:0
上传日期:2020-10-07 22:39:43
上 传 者sh-1993
说明:  生物实验速记解析器。,
(A parser for biological experiment shorthand.,)

文件列表:
LICENSE (1079, 2018-11-28)
doc/ (0, 2018-11-28)
doc/intro.md (107, 2018-11-28)
project.clj (602, 2018-11-28)
resources/ (0, 2018-11-28)
resources/datumsorts.json (1619218, 2018-11-28)
resources/grammar.bnf (5595, 2018-11-28)
src/ (0, 2018-11-28)
src/com/ (0, 2018-11-28)
src/com/sri/ (0, 2018-11-28)
src/com/sri/csl/ (0, 2018-11-28)
src/com/sri/csl/datum/ (0, 2018-11-28)
src/com/sri/csl/datum/cli.clj (1973, 2018-11-28)
src/com/sri/csl/datum/core.clj (1631, 2018-11-28)
src/com/sri/csl/datum/duplicate.clj (2476, 2018-11-28)
src/com/sri/csl/datum/errors.clj (3248, 2018-11-28)
src/com/sri/csl/datum/examples.clj (6310, 2018-11-28)
src/com/sri/csl/datum/ops.clj (1014, 2018-11-28)
src/com/sri/csl/datum/parse.clj (560, 2018-11-28)
src/com/sri/csl/datum/reader.clj (2237, 2018-11-28)
src/com/sri/csl/datum/sanity/ (0, 2018-11-28)
src/com/sri/csl/datum/sanity/assay.clj (944, 2018-11-28)
src/com/sri/csl/datum/sanity/check.clj (2255, 2018-11-28)
src/com/sri/csl/datum/sanity/core.clj (706, 2018-11-28)
src/com/sri/csl/datum/sanity/crawl.clj (1030, 2018-11-28)
src/com/sri/csl/datum/sanity/environment.clj (1224, 2018-11-28)
src/com/sri/csl/datum/sanity/misc.clj (393, 2018-11-28)
src/com/sri/csl/datum/sanity/sorts.clj (2080, 2018-11-28)
src/com/sri/csl/datum/sanity/subject.clj (714, 2018-11-28)
src/com/sri/csl/datum/sanity/treatment.clj (1224, 2018-11-28)
src/com/sri/csl/datum/transform/ (0, 2018-11-28)
src/com/sri/csl/datum/transform/assay.clj (845, 2018-11-28)
src/com/sri/csl/datum/transform/common.clj (546, 2018-11-28)
src/com/sri/csl/datum/transform/datum.clj (1321, 2018-11-28)
src/com/sri/csl/datum/transform/environment.clj (392, 2018-11-28)
src/com/sri/csl/datum/transform/extra.clj (460, 2018-11-28)
src/com/sri/csl/datum/transform/misc.clj (1130, 2018-11-28)
src/com/sri/csl/datum/transform/postprocess.clj (3830, 2018-11-28)
... ...

# datum A parser for the [Human Readable Datum Format](http://pl.csl.sri.com/datumkb.html) used by [Pathway Logic](http://pl.csl.sri.com/index.html). Takes in a file or directory of datums, does some basic sanity checking, and emits JSON. ## Usage $ java -jar datum-0.1.0-standalone.jar [args] [files/directories] ## Options Options: -e, --errors Print errors -o, --ops-file FILE Provide an external ops json file -j, --json Print parsed datums as JSON -J, --pretty-json Pretty-print parsed datums as JSON -D, --duplicates Print a list of duplicate datums -m, --merge Merge datums that only differ in extras. ## Ops For sanity and type checking, you will need an `ops file`, which is a JSON file containing a Maude type hierarchy of relevant sorts and ops. The parser is bundled with some default ops. Instructions for generating your own TBD. ## License Released under the MIT license. See LICENSE for the full license.

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