programming-for-biologists
说明： 西北大学芝加哥校区生物学家研讨会系列计划，
(Programming for Biologists workshop series at Northwestern University Chicago Campus,)
(Programming for Biologists workshop series at Northwestern University Chicago Campus,)
文件列表:
LICENSE (1079, 2018-09-18)
images/ (0, 2018-09-18)
images/pfb-logo.png (57357, 2018-09-18)
related.md (1253, 2018-09-18)
training-resources/ (0, 2018-09-18)
training-resources/command-line-and-git-installation.md (3702, 2018-09-18)
training-resources/command-line.md (617, 2018-09-18)
training-resources/python.md (409, 2018-09-18)
training-resources/shell-reference.md (2255, 2018-09-18)
workshops/ (0, 2018-09-18)
workshops/command-line-2015-09-24-flyer.pdf (860075, 2018-09-18)
workshops/command-line-2015-09-24.md (700, 2018-09-18)
images/ (0, 2018-09-18)
images/pfb-logo.png (57357, 2018-09-18)
related.md (1253, 2018-09-18)
training-resources/ (0, 2018-09-18)
training-resources/command-line-and-git-installation.md (3702, 2018-09-18)
training-resources/command-line.md (617, 2018-09-18)
training-resources/python.md (409, 2018-09-18)
training-resources/shell-reference.md (2255, 2018-09-18)
workshops/ (0, 2018-09-18)
workshops/command-line-2015-09-24-flyer.pdf (860075, 2018-09-18)
workshops/command-line-2015-09-24.md (700, 2018-09-18)
# Programming for Biologists
The group is focused at the Northwestern University Chicago Campus and is open to all members of the Northwestern community. The goals of the group are:
1. Introduce skills for researchers to conduct basic manipulations, run published software, and begin to write software themselves.
2. To serve as a networking opportunity and launch pad for additional training and research collaboration.
To achieve these goals, the group runs workshops and foster regular users group meetings.
## Workshops
| Title | Presented by | Date |
| ----- | --------- | ---- |
| [Introduction to the Command Line](https://github.com/mandel01/programming-for-biologists/blob/master/workshops/command-line-2015-09-24.md) | Jackie Milhans | September 24, 2015 |
| [Software Carpentry Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/http://xuf12.github.io/2015-11-10-northwesternu/) | Sarah Stevens, Jackie Milhans, Xu Fei | November 10-11, 2015 |
| [Hour of Code](https://github.com/mandel01/programming-for-biologists/blob/master/http://chipyhourofcode.pythonanywhere.com) | [ChiPy](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.chipy.org), Programming for Biologists, NU Research Computing | December 13, 2015 |
| [Seminar: Toward genome-resolved metagenomics, with applications to genomic epidemiology](https://github.com/mandel01/programming-for-biologists/blob/master/http://planitpurple.northwestern.edu/event/502043) | [Aaron Darling, PhD](https://github.com/mandel01/programming-for-biologists/blob/master/http://darlinglab.org) | September 16, 2016 |
| [Software Carpentry Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://nuitrcs.github.io/ProgrammingForBiologists/) | NU Research Computing | September 20-21, 2016 |
| [Software Carpentry Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://nuitrcs.github.io/NU-SWC-April2017/) | NU Research Computing | April 24-25, 2017 |
| [Transposon Insertion Sequencing Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://2017-dibsi-tnseq.readthedocs.io/en/latest/) | Mark Mandel | July 17-19, 2018 |
| [Transposon Insertion Sequencing Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://2018-inseq-workshop.readthedocs.io/en/latest/) | Mark Mandel (Madison, WI) | August 13-14, 2018 |
## Updated Calendar of Events
[Planit Purple](https://github.com/mandel01/programming-for-biologists/blob/master/http://planitpurple.northwestern.edu/calendar/4084)
Please also see links to other [related events](https://github.com/mandel01/programming-for-biologists/blob/master/related.md).
## User Group
In Fall 2015 a group met following the command line workshop, and in Winter/Spring 2016 a group from the Software Carpentry course met informally to follow up on Python material. In Fall 2016 we will look to assemble a Python-focused group of Chicago campus users.
## Listserv
To join the listserv send a message to `listserv@listserv.it.northwestern.edu` with the following in the body (not subject) of the message, filled in with your information:
`SUBSCRIBE BIOCODING Firstname Lastname`
## Sponsors
The activities of the group are made possible with support from [Research Computing](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.it.northwestern.edu/research/), from the [Driskill Graduate Program](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.feinberg.northwestern.edu/sites/dgp/), and from NSF grant IOS-1456963 to Mark Mandel.
## Contact
[Mark Mandel](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.feinberg.northwestern.edu/faculty-profiles/az/profile.html?xid=18804)
## Branding
Some ninja Googling has revealed that this fairly generic name "Programming for Biologists" is already in use in [Ethan White's Programming for Biologists Curriculum](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.programmingforbiologists.org). To be clear, we are not affiliated with him -- but upon finding his site it looks fantastic and people should definitely check it out and support it! Ethan has generously permitted us to continue to use the name, but in the future it would be good to have unique, Northwestern-specific branding for our group. Names & logo ideas are welcome!
The group is focused at the Northwestern University Chicago Campus and is open to all members of the Northwestern community. The goals of the group are:
1. Introduce skills for researchers to conduct basic manipulations, run published software, and begin to write software themselves.
2. To serve as a networking opportunity and launch pad for additional training and research collaboration.
To achieve these goals, the group runs workshops and foster regular users group meetings.
## Workshops
| Title | Presented by | Date |
| ----- | --------- | ---- |
| [Introduction to the Command Line](https://github.com/mandel01/programming-for-biologists/blob/master/workshops/command-line-2015-09-24.md) | Jackie Milhans | September 24, 2015 |
| [Software Carpentry Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/http://xuf12.github.io/2015-11-10-northwesternu/) | Sarah Stevens, Jackie Milhans, Xu Fei | November 10-11, 2015 |
| [Hour of Code](https://github.com/mandel01/programming-for-biologists/blob/master/http://chipyhourofcode.pythonanywhere.com) | [ChiPy](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.chipy.org), Programming for Biologists, NU Research Computing | December 13, 2015 |
| [Seminar: Toward genome-resolved metagenomics, with applications to genomic epidemiology](https://github.com/mandel01/programming-for-biologists/blob/master/http://planitpurple.northwestern.edu/event/502043) | [Aaron Darling, PhD](https://github.com/mandel01/programming-for-biologists/blob/master/http://darlinglab.org) | September 16, 2016 |
| [Software Carpentry Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://nuitrcs.github.io/ProgrammingForBiologists/) | NU Research Computing | September 20-21, 2016 |
| [Software Carpentry Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://nuitrcs.github.io/NU-SWC-April2017/) | NU Research Computing | April 24-25, 2017 |
| [Transposon Insertion Sequencing Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://2017-dibsi-tnseq.readthedocs.io/en/latest/) | Mark Mandel | July 17-19, 2018 |
| [Transposon Insertion Sequencing Workshop](https://github.com/mandel01/programming-for-biologists/blob/master/https://2018-inseq-workshop.readthedocs.io/en/latest/) | Mark Mandel (Madison, WI) | August 13-14, 2018 |
## Updated Calendar of Events
[Planit Purple](https://github.com/mandel01/programming-for-biologists/blob/master/http://planitpurple.northwestern.edu/calendar/4084)
Please also see links to other [related events](https://github.com/mandel01/programming-for-biologists/blob/master/related.md).
## User Group
In Fall 2015 a group met following the command line workshop, and in Winter/Spring 2016 a group from the Software Carpentry course met informally to follow up on Python material. In Fall 2016 we will look to assemble a Python-focused group of Chicago campus users.
## Listserv
To join the listserv send a message to `listserv@listserv.it.northwestern.edu` with the following in the body (not subject) of the message, filled in with your information:
`SUBSCRIBE BIOCODING Firstname Lastname`
## Sponsors
The activities of the group are made possible with support from [Research Computing](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.it.northwestern.edu/research/), from the [Driskill Graduate Program](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.feinberg.northwestern.edu/sites/dgp/), and from NSF grant IOS-1456963 to Mark Mandel.
## Contact
[Mark Mandel](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.feinberg.northwestern.edu/faculty-profiles/az/profile.html?xid=18804)
## Branding
Some ninja Googling has revealed that this fairly generic name "Programming for Biologists" is already in use in [Ethan White's Programming for Biologists Curriculum](https://github.com/mandel01/programming-for-biologists/blob/master/http://www.programmingforbiologists.org). To be clear, we are not affiliated with him -- but upon finding his site it looks fantastic and people should definitely check it out and support it! Ethan has generously permitted us to continue to use the name, but in the future it would be good to have unique, Northwestern-specific branding for our group. Names & logo ideas are welcome!
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