文件列表:

File_conversion_demo_R/ (0, 2021-01-18)
File_conversion_demo_R/File.conversion.source.R (4290, 2021-01-18)
File_conversion_demo_R/HapMap.VCF.example.R (962, 2021-01-18)
File_conversion_demo_R/example.simple.format.csv (3342, 2021-01-18)
SampleData/ (0, 2021-01-18)
SampleData/IWG_C3_5pct_KNNimp_biallelic_TASSEL.hmp.txt (9828752, 2021-01-18)
SampleData/IWG_C3_Q_matrix_structure_k2.txt (8057, 2021-01-18)
SampleData/IWG_C3_pheno_for_tassel.txt (17113, 2021-01-18)
SampleData/NAM03.hmp.txt (1057691, 2021-01-18)
TASSEL resources.md (330, 2021-01-18)
TASSEL_workshop_slides.pptx (5318759, 2021-01-18)

# TASSEL workshop Hosted by the University of Minnesota Plant Breeding Center Date: January 14, 2021 Intructors: Dr. Prabin Bajgain Email: bajga002@umn.edu Dr. Sushan Ru Email: sru@umn.edu # Description This half-day workshop aims to cover some common features of the TASSEL software. We will give an overview of TASSEL functions and then dive deeper into file format conversion, genotype imputation and LD, PCA, Kinship, and GWAS analysis. Prior to the workshop, please install TASSEL v5.0 at https://www.maizegenetics.net/tassel and download sample data from the SampleData folder. # Schedule January 14th via Zoom: 8:00am - 8:30am: Tassel overview, resources 8:30am - 09:30am: Data conversion, imputation* 9:30am - 9:45am: Break 9:45am - 11:30am: LD, PCA, Kinship, GWAS* 11:30am - 12:00pm: Questions & Wrap-up # Video recording https://umn.zoom.us/rec/play/uAgnjVj3kci_eIKN7foZfe1rhRCU4Cd9YZ232H64WdcJNv7zeWbFct73Z1PC5gqX_lCi2fcYihSp1j2A.0QBqZHFcw8UvWTKD?continueMode=true&_x_zm_rtaid=LMapnmjFTaK2KFTCjiso4A.1610994892983.82d80af1ff095a40b79e141ce6b7f5b0&_x_zm_rhtaid=375

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