timeseries
所属分类：时间序列预测
开发工具：R
文件大小：0KB
下载次数：0
上传日期：2023-08-02 18:27:36
上 传 者：
sh-1993
说明： Moorea中e5时间序列采样产生的数据，
(Data generated from e5 time series sampling in Moorea,)
文件列表:
HOBO_loggers/ (0, 2023-09-29)
HOBO_loggers/20221024_readout/ (0, 2023-09-29)
HOBO_loggers/20221024_readout/20444028_Mahana_7.csv (1557369, 2023-09-29)
HOBO_loggers/20221024_readout/20444028_Mahana_7.hobo (59264, 2023-09-29)
ITS2_sequencing/ (0, 2023-09-29)
ITS2_sequencing/20230425_Cunning_Symportal_datasheet.csv (91159, 2023-09-29)
ITS2_sequencing/symportal_output/ (0, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/ (0, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/20230429T054819_type_abundance_stacked_bar_plot.png (1812459, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/20230429T054819_type_abundance_stacked_bar_plot.svg (640451, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/260_20230428T204810_DBV_20230429T054819.profiles.absolute.abund_and_meta.txt (72822, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/260_20230428T204810_DBV_20230429T054819.profiles.absolute.abund_only.txt (61239, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/260_20230428T204810_DBV_20230429T054819.profiles.meta_only.txt (6529, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/260_20230428T204810_DBV_20230429T054819.profiles.relative.abund_and_meta.txt (79425, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/260_20230428T204810_DBV_20230429T054819.profiles.relative.abund_only.txt (67842, 2023-09-29)
ITS2_sequencing/symportal_output/its2_type_profiles/additional_info.txt (323, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/ (0, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/20230429T054819_seq_abundance_stacked_bar_plot.png (1753763, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/20230429T054819_seq_abundance_stacked_bar_plot.svg (1886467, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.additional_info.txt (260, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.absolute.abund_and_meta.txt (821596, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.absolute.abund_only.txt (616510, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.absolute.meta_only.txt (204807, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.fasta (168111, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.relative.abund_and_meta.txt (1039219, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.relative.abund_only.txt (758566, 2023-09-29)
ITS2_sequencing/symportal_output/post_med_seqs/260_20230428T204810_DBV_20230429T054819.seqs.relative.meta_only.txt (280374, 2023-09-29)
ITS2_sequencing/symportal_output/pre_med_seqs/ (0, 2023-09-29)
ITS2_sequencing/symportal_output/pre_med_seqs/20230429T054819_seq_abundance_stacked_bar_plot.png (1975696, 2023-09-29)
ITS2_sequencing/symportal_output/pre_med_seqs/20230429T054819_seq_abundance_stacked_bar_plot.svg (16012138, 2023-09-29)
ITS2_sequencing/symportal_output/pre_med_seqs/pre_med_absolute_abundance_df.csv (10413191, 2023-09-29)
ITS2_sequencing/symportal_output/pre_med_seqs/pre_med_master_seqs.fasta (2911352, 2023-09-29)
ITS2_sequencing/symportal_output/pre_med_seqs/pre_med_relative_abundance_df.csv (22386283, 2023-09-29)
metadata/ (0, 2023-09-29)
metadata/E5_2020_Timeseries_Sample_Metadata_Sheet.xlsx (22933, 2023-09-29)
metadata/E5_QC.xlsx (36461, 2023-09-29)
metadata/E5_Sites.png (701133, 2023-09-29)
metadata/E5_Waypoints_20200301.kml (15134, 2023-09-29)
... ...
     
# timeseries
## Experimental Design
#### To run scripts, set Knit directory to "Project Directory"
#### Data standards
- 'site' *(site where sample was collected)*
- 'site1' = Manava
- 'site2' = Mahana
- 'site3' = Hilton
- 'lon' *(longitude coordinate)*
- Use decimal degrees: *dd.ddddd°*
- 'lat' *(latitude coordinate)*
- Use decimal degrees: *dd.ddddd°*
- 'date'
- Use format: *YYYYMMDD*
- 'time'
- Use format: *hh:mm* with 24-hour clock
- 'species'. *(species of coral sampled)*
- 'POC' = *Pocillopora*
- 'POR' = *Porites*
- 'ACR' = *Acropora*
- 'colony_id' *(coral tag number)*
- Always include species and number separated by a dash, e.g. 'POC-201'
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