bio_io
所属分类：生物医药技术
开发工具：OCaml
文件大小：0KB
下载次数：0
上传日期：2023-09-10 20:19:46
上 传 者：
sh-1993
说明： OCaml库，提供对生物信息学（如FASTA文件）中使用的通用文件格式的编程访问。，
(An OCaml library that provides programmatic access to common file formats used in bioinformatics like FASTA files.,)
文件列表:
.ocamlformat (116, 2023-09-10)
CHANGELOG.md (2788, 2023-09-10)
LICENSE-APACHE.txt (9723, 2023-09-10)
LICENSE-MIT.txt (1077, 2023-09-10)
Makefile (2150, 2023-09-10)
bench/ (0, 2023-09-10)
bench/bench_btab.ml (773, 2023-09-10)
bench/bench_cigar.ml (848, 2023-09-10)
bench/bench_fasta.ml (345, 2023-09-10)
bench/bench_fasta_exe.ml (138, 2023-09-10)
bench/bench_io.ml (1865, 2023-09-10)
bench/cat.ml (290, 2023-09-10)
bench/cat_btab.ml (324, 2023-09-10)
bench/cat_btab_old.ml (339, 2023-09-10)
bench/dune (266, 2023-09-10)
bench/read.ml (154, 2023-09-10)
bench/read_btab.ml (142, 2023-09-10)
bench/read_btab_old.ml (152, 2023-09-10)
bench/seqs.10000.faa (10108894, 2023-09-10)
bench/share.ml (852, 2023-09-10)
bio_io-dev.opam (844, 2023-09-10)
bio_io.opam (1186, 2023-09-10)
bio_io.opam.template (30, 2023-09-10)
dune-project (1661, 2023-09-10)
examples/ (0, 2023-09-10)
examples/btab.ml (371, 2023-09-10)
examples/btab_queries.ml (504, 2023-09-10)
examples/dune (220, 2023-09-10)
examples/fasta_sequence_lengths.ml (345, 2023-09-10)
examples/fasta_stdin.ml (238, 2023-09-10)
examples/parse_fasta.ml (476, 2023-09-10)
examples/read_fasta_to_map.ml (711, 2023-09-10)
... ...
# Bio_io
[](https://github.com/mooreryan/bio_io/actions/workflows/build_and_test.yml) [](https://coveralls.io/github/mooreryan/bio_io?branch=main)
`Bio_io` is an OCaml library that provides programmatic access to
common file formats used in bioinformatics like FASTA files.
## Quick Start
### Install
```
opam install bio_io
```
### Example
Read a FASTA file and print the ID and sequence length for each record.
```ocaml
open! Base
let fasta_file = "sequences.fasta"
let () =
(* This open gives you [In_channel] and [Record]. *)
let open Bio_io.Fasta in
In_channel.with_file_iter_records fasta_file ~f:(fun record ->
(* Print the ID and the length of the sequence. *)
Stdio.printf "%s => %d\n" (Record.id record) (Record.seq_length record))
```
## Docs
For more examples, API, and other usage info, see the [docs](https://mooreryan.github.io/bio_io/).
## License
[](https://github.com/mooreryan/bio_io)
Licensed under the Apache License, Version 2.0 or the MIT license, at
your option. This program may not be copied, modified, or distributed
except according to those terms.
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