文件列表:

LICENSE (1106, 2023-10-31)
Project.toml (1390, 2023-10-31)
data/ (0, 2023-10-31)
data/example_datasets.h5 (550048, 2023-10-31)
docs/ (0, 2023-10-31)
docs/Project.toml (494, 2023-10-31)
docs/basic_example_for_docs.jl (10621, 2023-10-31)
docs/make.jl (3269, 2023-10-31)
docs/src/ (0, 2023-10-31)
docs/src/api.md (634, 2023-10-31)
docs/src/changelog.md (4337, 2023-10-31)
docs/src/cite.md (711, 2023-10-31)
docs/src/funding.md (373, 2023-10-31)
docs/src/index.md (8077, 2023-10-31)
src/ (0, 2023-10-31)
src/RedClust.jl (1788, 2023-10-31)
src/example_data.jl (3032, 2023-10-31)
src/mcmc.jl (21137, 2023-10-31)
src/pointestimate.jl (4631, 2023-10-31)
src/prior.jl (12551, 2023-10-31)
src/summaries.jl (2218, 2023-10-31)
src/types.jl (12888, 2023-10-31)
src/utils.jl (6755, 2023-10-31)
test/ (0, 2023-10-31)
test/Project.toml (254, 2023-10-31)
test/runtests.jl (883, 2023-10-31)
test/test_datagen.jl (624, 2023-10-31)
test/test_fitprior.jl (2011, 2023-10-31)
test/test_pointestimates.jl (1195, 2023-10-31)
test/test_sampler.jl (678, 2023-10-31)
test/test_utils.jl (2050, 2023-10-31)

# RedClust [![GitHub Workflow Status (master)][github-CI-img]][github-CI-url] [![License][license-img]][license-url] [![Latest release][release-img]][release-url] [![Code Coverage][codecov-img]][codecov-url] ## Documentation [![Development version documentation][docs-dev-img]][docs-dev-url] [![Stable version documentation][docs-stable-img]][docs-stable-url] [![arxiv paper link][arxiv-img]][arxiv-url] Please see the detailed documentation above. ## Introduction [RedClust](https://github.com/abhinavnatarajan/RedClust.jl) is a [Julia](https://julialang.org/) package for Bayesian clustering of high-dimensional Euclidean data using pairwise dissimilarities instead of the raw observations. It uses an MCMC sampler to generate posterior samples from the space of all possible clustering structures on the data. ## Installation The package can be installed by typing `]add RedClust` into the Julia REPL or by the usual method: ```julia using Pkg Pkg.add("RedClust") ``` ## Basic example ```julia using RedClust # Generate data points, distM, clusts, probs, oracle_coclustering = generatemixture(100, 10; α = 10, σ = 0.25, dim = 10) # Let RedClust choose the best prior hyperparameters params = fitprior(pnts, "k-means", false) # Set the MCMC options options = MCMCOptionsList(numiters = 5000) data = MCMCData(points) # Run the sampler result = runsampler(data, options, params) # Get a point estimate pointestimate, index = getpointestimate(result) # Summary of point estimate summarise(pointestimate, clusts) ``` A more elaborate example can be found in the detailed documentation. Examples from the paper and its supplementary material can be found in the ['examples' branch of this repository](https://github.com/abhinavnatarajan/RedClust.jl/tree/examples). ## Citing this package If you want to use this package in your work, please cite it as: Natarajan, A., De Iorio, M., Heinecke, A., Mayer, E. and Glenn, S. (2023). ‘Cohesion and Repulsion in Bayesian Distance Clustering’, _Journal of the Americal Statistical Association_. DOI: [10.1080/01621459.2023.2191821](https://doi.org/10.1080/01621459.2023.2191821). For BibTeX users: ```latex @article{NDI23, doi = {10.1080/01621459.2023.2191821}, author = {Natarajan, Abhinav and De Iorio, Maria and Heinecke, Andreas and Mayer, Emanuel and Glenn, Simon}, title = {Cohesion and Repulsion in Bayesian Distance Clustering}, journal = {Journal of the American Statistical Association}, year = {2023} } ``` [github-CI-img]: https://img.shields.io/github/actions/workflow/status/abhinavnatarajan/RedClust.jl/CI.yml?logo=github&labelColor=222222 [github-CI-url]: https://github.com/abhinavnatarajan/RedClust.jl/actions/workflows/CI.yml [codecov-img]: https://img.shields.io/codecov/c/github/abhinavnatarajan/RedClust.jl?logo=codecov&labelColor=222222&logoColor=white [codecov-url]: https://app.codecov.io/gh/abhinavnatarajan/RedClust.jl/ [release-img]: https://img.shields.io/github/v/release/abhinavnatarajan/RedClust.jl?display_name=tag&logo=SemVer&sort=semver&labelColor=222222 [release-url]: https://github.com/abhinavnatarajan/RedClust.jl/releases [license-img]: https://img.shields.io/github/license/abhinavnatarajan/RedClust.jl?style=flat&labelColor=222222 [license-url]: https://github.com/abhinavnatarajan/RedClust.jl/blob/master/LICENSE [docs-dev-img]: https://img.shields.io/badge/docs-dev-blue?style=flat&labelColor=222222 [docs-dev-url]: https://abhinavnatarajan.github.io/RedClust.jl/dev/ [docs-stable-img]: https://img.shields.io/badge/docs-stable-blue?style=flat&labelColor=222222 [docs-stable-url]: https://abhinavnatarajan.github.io/RedClust.jl/stable/ [arxiv-img]: https://img.shields.io/badge/arxiv-2107.05414-red?style=flat&labelColor=222222 [arxiv-url]: https://arxiv.org/abs/2107.05414

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