BDS-2023
所属分类：生物医药技术
开发工具：Jupyter Notebook
文件大小：0KB
下载次数：0
上传日期：2023-11-21 09:43:13
上 传 者：
sh-1993
说明： 我在乌日霍罗德2023年生物数据科学学校期间完成的项目
(The projects I have done during Biological Data Science School 2023 in Uzhhorod)
文件列表:
Cancer_dataset_task/ (0, 2023-11-21)
Cancer_dataset_task/Cancer_practice.ipynb (281647, 2023-11-21)
Cancer_dataset_task/PCA.gif (1967029, 2023-11-21)
Cancer_dataset_task/SignatureAnalyzer_COMPOSITE.SBS.txt.gz (19567503, 2023-11-21)
Cancer_dataset_task/TableS3_panorama_driver_mutations_ICGC_samples.public.tsv.gz (167720, 2023-11-21)
Cancer_dataset_task/pcawg_donor_clinical_August2016_v9.xlsx (202952, 2023-11-21)
Cancer_dataset_task/pcawg_rnaseq_gene_expr_tpm.tsv.gz (56930404, 2023-11-21)
Cancer_dataset_task/pcawg_sample_sheet.tsv (1486947, 2023-11-21)
LICENSE (1113, 2023-11-21)
blood-cells.ipynb (234462, 2023-11-21)
(0, 2023-11-21)
images/ (0, 2023-11-21)
images/TEST/ (0, 2023-11-21)
images/TEST/EOSINOPHIL/ (0, 2023-11-21)
images/TEST/EOSINOPHIL/_0_1616.jpeg (8605, 2023-11-21)
images/TEST/EOSINOPHIL/_0_1794.jpeg (7993, 2023-11-21)
images/TEST/EOSINOPHIL/_0_1845.jpeg (8316, 2023-11-21)
images/TEST/EOSINOPHIL/_0_187.jpeg (7964, 2023-11-21)
images/TEST/EOSINOPHIL/_0_196.jpeg (8552, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2107.jpeg (7953, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2183.jpeg (8063, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2313.jpeg (8358, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2498.jpeg (7713, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2634.jpeg (9281, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2789.jpeg (8529, 2023-11-21)
images/TEST/EOSINOPHIL/_0_2963.jpeg (7417, 2023-11-21)
images/TEST/EOSINOPHIL/_0_3083.jpeg (8182, 2023-11-21)
images/TEST/EOSINOPHIL/_0_3249.jpeg (8508, 2023-11-21)
images/TEST/EOSINOPHIL/_0_3809.jpeg (8082, 2023-11-21)
images/TEST/EOSINOPHIL/_0_3859.jpeg (8403, 2023-11-21)
images/TEST/EOSINOPHIL/_0_4055.jpeg (8044, 2023-11-21)
images/TEST/EOSINOPHIL/_0_4130.jpeg (8057, 2023-11-21)
images/TEST/EOSINOPHIL/_0_463.jpeg (9028, 2023-11-21)
images/TEST/EOSINOPHIL/_0_5642.jpeg (7999, 2023-11-21)
images/TEST/EOSINOPHIL/_0_5709.jpeg (7830, 2023-11-21)
images/TEST/EOSINOPHIL/_0_5733.jpeg (7968, 2023-11-21)
images/TEST/EOSINOPHIL/_0_586.jpeg (7625, 2023-11-21)
images/TEST/EOSINOPHIL/_0_5974.jpeg (8856, 2023-11-21)
images/TEST/EOSINOPHIL/_0_5988.jpeg (7789, 2023-11-21)
... ...
# BDS-2023
The projects I have done during Biological Data Science School 2023 in Uzhhorod
## Blood_cells (Final project)
In blood-cells.ipynb I am training the model to classify the Blood cells dataset from Kaggle.
I used ResNet50V2 for the task and got 99.6% validation accuracy.
## Cancer Task
The purpose of this task was to make an inference about the relation between different types of cancer using the provided datasets.
The datasets have a lot of irrelevant and missing data, which was the main difficulty of the task.
Exploring the data I decided to use only transcriptions-level data.
I have done PCA (dim=3), and do a 3D plot to see the distribution of different types of cancer in space.
### The final graph for the cancer task
*For more information see the corresponding notebooks*
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