文件列表:

Intestinal_organoid_analysis/
Organoid_sketons_to_image/pix2pix/
Organoids_tracking/yolov5-unet-track/

# OrgaTracker Involving in Organoids Growth and Recreation – Development of an Intelligent OrgaTracker System for Multi-Dimensional Organoid Analysis The system is divided into three parts: ## 1.Organoid_tracking The first part realizes organoid tracking and segmentation and organoid fusion capture.   ## 2.Intestinal_organoids_analysis The second part shows the quantitative budding and the structural analysis of mouse intestinal organoids from day 0 to day 4. ## 3.Organoid_sketches_to_images The third part shows the generation of organoids from sketches. Video: https://user-images.githubusercontent.com/64136561/213444202-5425bb0e-31d6-4b16-9b70-5cf8ee18474d.mp4 # Installation Clone this project: ``` git clone git@github.com:duxuan11/OrgaTracker.git ``` ## For Pip install ``` pip install -r requirements.txt ``` ## Verify Run the demo: ### Organoid_tracking ``` cd OrgaTracker/organoid_tracking/yolov5-unet-track python test.py --data data/image/ ``` ### Intestinal_organoid_analysis ``` cd Intestinal_organoids_analysis/crypt_quantization or cd Intestinal_organoids_analysis/structured_analysis python test.py --data data/image/ ``` ### Organoid_sketches_to_images ``` cd Organoid_sketches_to_images/pix2pix python organ_test.py --dataroot ./datasets/edges2organoids --name edges2organoids_pix2pix --model pix2pix --direction AtoB ```

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