ABCSMC_sysbio.tar
所属分类：生物医药技术
开发工具：Python
文件大小：1011KB
下载次数：23
上传日期：2011-12-21 12:07:45
上 传 者：
yanruoke
说明： 基于近似贝叶斯计算思想，用于系统生物学里模块功能搜索，结构筛选，参数区间权重划分。强大之处在于，练习者只须用新的生物case编一个input文件即可。输出量为模型，参数的权重。欲改进者可考虑引进粒子滤波中的权重给定方法。
(Approximate Bayesian Computation in
Python with GPU support。)
文件列表:
abc-sysbio-2.04 (0, 2011-09-28)
abc-sysbio-2.04\doc (0, 2011-09-28)
abc-sysbio-2.04\doc\ABC-SysBio-Manual.pdf (789746, 2011-09-28)
abc-sysbio-2.04\PKG-INFO (357, 2011-09-28)
abc-sysbio-2.04\scripts (0, 2011-09-28)
abc-sysbio-2.04\scripts\abc-sysbio-sbml-sum (1824, 2011-09-28)
abc-sysbio-2.04\scripts\run-abc-sysbio (12851, 2011-09-28)
abc-sysbio-2.04\setup.py (1038, 2011-09-28)
abc-sysbio-2.04\examples (0, 2011-09-28)
abc-sysbio-2.04\examples\Example1 (0, 2011-09-28)
abc-sysbio-2.04\examples\Example1\input_file_SIR.xml (5499, 2011-09-28)
abc-sysbio-2.04\examples\Example1\data.txt (326, 2011-09-28)
abc-sysbio-2.04\examples\Example1\input_file_SIR_simulation.xml (4226, 2011-09-28)
abc-sysbio-2.04\examples\Example1\input_file_SIR_x0.xml (5531, 2011-09-28)
abc-sysbio-2.04\examples\Example1\input_file_SIR_x0_normk.xml (5558, 2011-09-28)
abc-sysbio-2.04\examples\Example1\SIRModel1.xml (3603, 2011-09-28)
abc-sysbio-2.04\examples\Example1\SIRModel2.xml (4718, 2011-09-28)
abc-sysbio-2.04\examples\Example1\SIRModel3.xml (4205, 2011-09-28)
abc-sysbio-2.04\examples\Example1\input_file_SIR_normk.xml (5520, 2011-09-28)
abc-sysbio-2.04\examples\Example1\input_file_SIR_auto.xml (5448, 2011-09-28)
abc-sysbio-2.04\examples\Example2 (0, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow_restart.xml (3292, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow_normk.xml (3289, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow_x0.xml (3291, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow_simulation.xml (2199, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow_normk2.xml (3298, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow_x0_restart.xml (3293, 2011-09-28)
abc-sysbio-2.04\examples\Example2\LinearGrowthModelModified.py (647, 2011-09-28)
abc-sysbio-2.04\examples\Example2\input_file_lingrow.xml (3290, 2011-09-28)
abc-sysbio-2.04\examples\Example3 (0, 2011-09-28)
abc-sysbio-2.04\examples\Example3\input_file_dimerisation.xml (2614, 2011-09-28)
abc-sysbio-2.04\examples\Example3\DimerisationDiscreetStochastic.xml (2195, 2011-09-28)
abc-sysbio-2.04\examples\Example3\input_file_dimerisation_auto.xml (2563, 2011-09-28)
abc-sysbio-2.04\examples\Example4 (0, 2011-09-28)
abc-sysbio-2.04\examples\Example4\logistic.xml (10186, 2011-09-28)
abc-sysbio-2.04\examples\Example4\input_file_pop_sde.xml (4964, 2011-09-28)
abc-sysbio-2.04\examples\Example4\input_file_pop_mjp.xml (4977, 2011-09-28)
abc-sysbio-2.04\examples\Example4\input_file_pop_ode.xml (4964, 2011-09-28)
abc-sysbio-2.04\examples\Example4\immigration-death.xml (2392, 2011-09-28)
... ...
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