文件列表:

alpha_energy_parameters001.m (2255, 2012-11-16)
bound.m (289, 2012-11-16)
phy_coop_self.m (6228, 2012-11-16)
test_alpha_energy_parameters001_XP.mat (11059416, 2012-11-16)
test_phy_alpha.m (18535, 2012-11-16)

phy_coop_self.m -- this is the primary function that you are interested in. It is where the cooperative recruitment protocol (Table I in my paper) is implemented and where the direct, phase I, and phase 2 rates are calculated (with these, you can compute the cooperative rate). You can deduce the meaning of the input and output arguments from the comments and by looking in alpha_energy_parameters001.m. alpha_energy_parameters001.m -- this file contains all of the simulation parameters. Most of these parameters match those in Table II in my paper. There are some additional parameters that are used in phy_coop_self.m. test_phy_alpha.m -- this file gives you an example of how to run phy_coop_self.m (i.e. how to generate the inputs to to the phy_coop_self function). There are two ways to run this code, depending on what you keep commented and what you keep uncommented. Specifically, there is one section that begins "%% Load already generated data (uncomment below code)." This segment of code, which is currently uncommented, loads previously generated data from a matlab record file (test_alpha_energy_parameters001.mat, which I've also attached to this email). There is a second section that says "%% Or ... Generate new data (uncomment everything below - expect long execution time." If you uncomment this section of code, and comment the previously mentioned section, then you will essentially generate the data that is in test_alpha_energy_parameters001.mat." This takes a long time, which is why I saved the data to a separate file in the first place. You will see that when you run test_phy_alpha.m you will get several of the plots that are in my paper. bound.m -- this is a function that is used in test_phy_alpha.m. It is just a simple helper function used to simplify a computation.

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