文件列表:

awvoronoi-run-1.0.0 (0, 2012-12-25)
awvoronoi-run-1.0.0\awvoronoi-run-1.0.0.jar (28759, 2012-12-25)
awvoronoi-run-1.0.0\doc (0, 2012-12-25)
awvoronoi-run-1.0.0\doc\doc-awvoronoi.pdf (602577, 2012-12-25)
awvoronoi-run-1.0.0\doc\LICENSE.TXT (1088, 2012-09-11)
awvoronoi-run-1.0.0\input (0, 2012-12-25)
awvoronoi-run-1.0.0\input\1JQ1.xml.gz (12840, 2012-09-11)
awvoronoi-run-1.0.0\input\simple.txt (624, 2012-12-19)
awvoronoi-run-1.0.0\lib (0, 2012-12-25)
awvoronoi-run-1.0.0\lib\awvoronoi-1.0.0.jar (157755, 2012-12-25)
awvoronoi-run-1.0.0\lib\caver-delaunay-factory-1.0.3.jar (11067, 2012-12-25)
awvoronoi-run-1.0.0\lib\caver-qhull-3.0_beta4.jar (32682, 2012-12-25)
awvoronoi-run-1.0.0\lib\delaunay-cell-discovery-1.0.0.jar (20994, 2012-12-25)
awvoronoi-run-1.0.0\lib\jaxb2-basics-runtime-0.6.4.jar (145439, 2012-12-25)
awvoronoi-run-1.0.0\lib\org-openide-util-lookup-8.3.1.jar (304492, 2012-12-25)
awvoronoi-run-1.0.0\lib\schema-atoms-1.1.0.jar (17764, 2012-12-25)
awvoronoi-run-1.0.0\lib\schema-pdbx-4.1.0.jar (2217440, 2012-12-25)
awvoronoi-run-1.0.0\properties.xml (660, 2012-12-25)

AWVORONOI-RUN ------------- Version: 1.0.0 Home: http://awvoronoi.sf.net License: MIT Description: A console application that reads weighted points and writes their additively weighted triangulation. Logs are written to the standard error output. Spatial filtering, Delaunay triangulation and CPU parallelism are used to achieve better performance. Delaunay triangulation is computed by a lightweight version of the CAVER library (http://www.caver.cz). See doc/doc-awvoronoi.pdf for more information. Usage: java -jar awvoronoi-run-1.0.0.jar [-h] input [output] (to read weighted points and write their aw-triangulation) where: -h prints this help message and quits. input is an URI with a text, an XML, or a GZ file. A text input contains X Y Z R lines, an XML input descriebes a molecule (www.pdb.org) and a GZ input is a gzipped variant of one of the previous. output is an XML or an XML.GZ file with the triangulation. If ommited, the triangulation is written to the standard output. Remarks: Logs are written to the standard error output. Properties are read from the file "properties.xml". If the file is missing, they are read from the JAR as the resource "/net/sf/awvoronoi/extra/run/properties.xml". If the computations fails, you may want to change the property input_coordinates_perturbation to a small value (1.0E-6 should be fine). Example: java -jar awvoronoi-run-1.0.0.jar http://www.rcsb.org/pdb/files/1AAJ.xml.gz c:/temp/out.xml.gz Build from sources: First download and install Mercurial from http://mercurial.selenic.com and then execute the following commands hg clone http://awvoronoi.hg.sourceforge.net:8000/hgroot/awvoronoi/dev-root-awvoronoi cd dev-root-awvoronoi/tags/1.0.0 mvn install cd suite-awvoronoi-run-full mvn install If you want to support this project, please visit https://sourceforge.net/donate/index.php?group_id=518813

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