singularity-blat

所属分类:collect
开发工具:Lua
文件大小:0KB
下载次数:0
上传日期:2023-10-01 22:35:57
上 传 者sh-1993
说明:  类似BLAST的对齐工具。
(BLAST-Like Alignment Tool.)

文件列表:
36/ (0, 2023-10-01)
36/Dockerfile (315, 2023-10-01)
36/Singularity (305, 2023-10-01)
36/blat (344, 2023-10-01)
36/build.sh (109, 2023-10-01)
36/dbuild.sh (126, 2023-10-01)
36/modulefile (724, 2023-10-01)
36/modulefile.lua (1580, 2023-10-01)
36/pull.sh (202, 2023-10-01)
36/rbuild.sh (113, 2023-10-01)
36/test.sh (28, 2023-10-01)
CONTRIBUTING.md (3921, 2023-10-01)
LICENSE (11358, 2023-10-01)

![Status](https://github.com/pscedu/singularity-blat/actions/workflows/main.yml/badge.svg) ![Status](https://github.com/pscedu/singularity-blat/actions/workflows/pretty.yml/badge.svg) ![Issue](https://img.shields.io/github/issues/pscedu/singularity-blat) ![forks](https://img.shields.io/github/forks/pscedu/singularity-blat) ![Stars](https://img.shields.io/github/stars/pscedu/singularity-blat) ![License](https://img.shields.io/github/license/pscedu/singularity-blat) # singularity-blat Singularity recipe for [BLAT](https://github.com/djhshih/blat). ## Installing the container on Bridges 2 Copy the * `SIF` file * and the `blat` script to `/opt/packages/BLAT/36`. Copy the file `modulefile.lua` to `/opt/modulefiles/BLAT` as `36.lua`. ## Building the image using the recipe ### To build the image locally Run the script `build.sh` to build image locally. ``` bash ./build.sh ``` ### To build the image remotely Run the script `rbuild.sh` to build image remotely. ``` bash ./rbuild.sh ``` ## To run tests To run the available tests, run the command ``` bash ./test.sh ``` --- Copyright 2020-2023 Pittsburgh Supercomputing Center. All Rights Reserved. The [Biomedical Applications Group](https://www.psc.edu/biomedical-applications/) at the [Pittsburgh Supercomputing Center](http://www.psc.edu) in the [Mellon College of Science](https://www.cmu.edu/mcs/) at [Carnegie Mellon University](http://www.cmu.edu).

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