plawireg:玩参考图

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  • 2022-06-14 04:17
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Plawireg:玩参考图 该项目是将参考基因组显示为图形的实验。 暂时没有什么真正有趣的…… 建造 该项目使用omake构建系统,只需运行: omake 运行测试 一个可以生成一些非常小的测试数据文件: ./plawireg generate test fasta mini-reference.fasta ./plawireg generate test dbsnp mini-dbsnp.vcf 并运行一些东西: ./plawireg test-load all 6 mini-reference.fasta mini-dbsnp.vcf 您可以使事情变得更加冗长: VERBOSE=true ./plawireg test-load all 6 mini-reference.fasta mini-dbsnp.vcf 或询问“仅Linux”的内存使用情况统计信息: ./
plawireg-master.zip
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内容介绍
Plawireg: Play With The Reference Graph ======================================= This project is an experiment on representing the reference genome as a graph. Nothing really interesting to see for now … Build ----- This project uses the `omake` build-system, just run: omake Run Tests --------- One can generate some very small test data files: ./plawireg generate test fasta mini-reference.fasta ./plawireg generate test dbsnp mini-dbsnp.vcf and run some stuff: ./plawireg test-load all 6 mini-reference.fasta mini-dbsnp.vcf You can make things more verbose: VERBOSE=true ./plawireg test-load all 6 mini-reference.fasta mini-dbsnp.vcf Or ask for “linux-only” memory-usage stats along the way: ./plawireg test-load all 6 mini-reference.fasta mini-dbsnp.vcf memory-stats The test dumps a `out.dot` file that one can observe: dot -Tpng out.dot -O It should give something like this: ![Output as of 2015-03-06][plawireg-dot-output] [plawireg-dot-output]: https://cloud.githubusercontent.com/assets/617111/6535827/f161ffd8-c415-11e4-8b21-b2f97655c407.png
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